"'Free software' is a matter of liberty, not price. To understand the concept, you should think of 'free' as in 'free speech,' not as in 'free beer'."
Richard Stallman.

Allink: software for data analysis, image processing, simulation, differential equation solver.
Download sources: with " svn co svn://svn.theorie.physik.uni-goettingen.de/marelli/Allink ".
Compile: edit "/include/MakeInclude.mk" and run "make".
Documentation: here with doxygen.


Visualization of linked particles, isosurfaces, depth plot, Delaunay triangulations...
Required:OpenGl, optional CGAL.

Mechanical properties calculation for a system of particles bounded in chains. Perform a calculation of the characteristic properties of lipid chains in bilayer membrane (diffusivity, pressure profile, radial density plot...).
Optional:OpenGl, optional CGAL.

Monte Carlo: Monte Carlo simulations with configurational bias for energy calculations of lipid chains.

Monte Carlo: simulation of the most convenient path to connect the red spots. The energy of the system corresponds in the cost of building the line and the gain in connecting the houses.

Solution of a forth order differential equation on a lattice (solution of the Helfrich Hamiltonian). The boundary condition are represented by the blue and red points, the minimum image convection can be applied in every direction.
Optional:OpenGl, povray.

Diffusion simulation of point defects using kinetic Monte Carlo method.
The particle positions are initialized according to the distribution of ions on the surface.

Web/database <- top -> Analysis/visualization