Allink  v0.1
Forces Member List

This is the complete list of members for Forces, including all inherited members.

AddChains(char *filename, double Thickness)VarData
AddCholesterol(char *filename, double Thickness, int s)VarData
AddCircle(int nNano)Forces
AddCylinder(int nNano)Forces
AddDens(int pInit, int pEnd)Forces
AddPore(int nNano)Forces
AddProtein(int NCircle, int NHeight, int nNano, char *filename)VarData
AddRigid()Forces
AddSolvent(char *filename, int nWater)VarData
AddStuffing(char *filename, int nStuffing, int nNano)VarData
AllocChain()VarData
AllocLinks(int NewNCh)VarData
AllocMethod()Forces
AllocPart()VarData
AllocTens()Forces
AndersenTherm()Forces
ApplyTherm()Forcesinline
AreaDistr(double *Distr, double *RadDistr, int NSample)VarData
Arrange(int **Triangle, int Vertex)VarData
AvForces(char **argv, int *FilePos, int NFile)Forces
BackBone(double *Line, int NBin)VarData
BackFold(int How)VarData
Bead2MoveForces
BeadTypeForces
BerendsenTherm()Forces
BfDefChain()VarData
BfEdge()VarData
BfPep()VarData
BlockVarData
BraketPos(char *str, char *mask, int *sPos, int *sLen)VarData
CALC_THERM typedefForces
CalcBending(int p)Forces
CalcBendingGhost(double *Pos, int pExt)Forces
CalcBonded(int p, double *Pot)Forces
CalcBondedCh(int c, double *Pot)Forces
CalcDens(int pInit, int pEnd)Forces
CalcDens()Forces
CalcForcesDensFunc()Forces
CalcModeForces
CalcnPos(double *Pos)VarData
CalcNrgBead(int p, double *Pot)Forcesinline
CalcNrgBeadDensFunc()Forces
CalcNrgBeadDensFunc(int p, double *Pot)Forces
CalcNrgCh(int c, double *Pot)Forcesinline
CalcNrgPep(char *File2Open, int f)Forces
CalcPairwise(int p, double *Pot)Forces
CalcPairwiseCh(int c, double *Pot)Forces
CalcSpring(int p)Forces
CalcTens()Forces
CalcTens(char **argv, int *FilePos, int NFile)Forces
CalcThermForces
CalcTotNrg(char *FName, int nFile)Forces
CalcTotNrgBead()Forces
CalcTotNrgCh()Forces
ChVarData
ChangeNChain(int NChain, int b)VarData
CheckDomDec(int p)Forces
CheckNano(double *Pos, int s)VarData
CheckPairList()Forces
ChemPotExForces
ChemPotIdForces
ChooseSimMode()Forces
ChooseThermostat(int Mode)Forces
CLat1VarData
CLat2VarData
ClearDens()Forces
CNormVarData
ConnectLineChain(VAR_LINE *Triang, int NGrid, int NTri)VarData
ConnectLineChain2(VAR_LINE *Triang, int NGrid, int NTri)VarData
ConnectLineChain3(VAR_LINE *Triang, int NGrid, int NTri)VarData
ConsiderCh(int c)Forces
ConvoluteMatrix(double *Plot, int NGrid, Matrice *Mask, int NDim)VarData
ConvoluteMatrix1(double *Plot, int NGrid, Matrice *Mask)VarData
ConvoluteMatrix2(double *Plot, int NGrid, Matrice *Mask)VarData
ConvoluteMatrix3(double *Plot, int NGrid, Matrice *Mask)VarData
Copy(PART *P1, PART *P2, int NPartOld)VarData
Copy(CHAIN *C1, CHAIN *C2, int NChainOld)VarData
Core(double ***Plot, int NSample, double Border[3][2])VarData
Create1d()Forces
Create2d()Forces
Create3d()Forces
CreateCoating(int *arch, double Thickness, int s)VarData
CreateElectro()Forces
CreateInitial()Forces
CreateLeaves()Forces
CreateMC()Forces
CreateMD()Forces
CreateObstacle(int *arch, double Thickness, int s)VarData
CreatePlanar(int *arch, double Thickness, int s)VarData
CreatePore()Forces
CreateProtein(int nNano, int nStart)VarData
CreateRigid()Forces
CreateRod()Forces
CreateSetBond(int p, int t)Forces
CreateSoft(int *arch, double Thickness, int s)VarData
CreateStalk()Forces
CreateTube(int *arch, double Thickness, int s)VarData
CreateVesicle(int *arch, double Thickness, int s)VarData
CutOffForces
cWhat2DrawVarData
CylinderForces
DefBlock(int *NChStep, int How)VarData
DefForceParam()Forces
DefNanoForceParam()Forces
DefRest(int *arch, int s)VarData
DefSoft(char *nome2, char *ConfF)VarData
DeltatForces
DensFuncNrgBead(int p1)Forces
DensFuncNrgCh(int c, double *Pot)Forces
DensFuncNrgChAv(int c)Forces
DensFuncNrgChInternal(int c)Forces
DensFuncNrgGhost(double *Pos, int p1, int t1)Forces
DensFuncNrgGhostInternal(double *Pos, int p1, int t1)Forces
DensFuncNrgSys()Forces
DensityProfile(int coord, int NSample, int NType, double *dDensity)VarData
DerWei2(const double r, const double b)Forces
DerWei3(const double r, const double a)Forces
DistFromNp()VarData
DrawCarpet()Forces
DrawNano()Forces
DrawParticles()Forces
DrawScene()Forces
DrawSoil()Forces
DrBondLine(int p)Forces
DxForces
Dynamics()Forces
DynamicsView()Forces
DynIntegration()Forces
ElectroPot(double Dist2, int t1, int t2, double *Pot)Forces
ExploreDoubleMin()Forces
ExplorePepSize()Forces
ExplorePepSize2d()Forces
Fetch(char *str, char *mask, char *fmt,...)VarData
Fetch(char *str, char *mask, int NArg, double *Val)VarData
FieldBound(double *Pos, int n)VarData
FieldCyl(double *Pos, int n)VarData
FieldElips(double *Pos, int n)VarData
FieldJanus(double *Pos, int n)VarData
FieldNo(double *Pos, int n)VarData
FieldParab(double *Pos, int n)VarData
FieldSphere(double *Pos, int n)VarData
FieldTilt(double *Pos, int n)VarData
FieldTiltWall(double *Pos, int n)VarData
FieldTorus(double *Pos, int n)VarData
FieldTransMem(double *Pos, int n)VarData
FillMatrix()Forces
FindNeighbours(char *FileName)VarData
FmForces
Folding()VarData
ForceFieldBulk()Forces
ForceFieldLeaves()Forces
ForceFieldLine()Forces
ForceFieldRigid()Forces
ForceFieldRod()Forces
Forces(int argc, char **argv, int NPart, char *ConfFile)Forces
Forces(int argc, char **argv, char *ConfFileExt, char *Snapshot)Forces
FrameForces
GaussVarForces
GetForceField()Forces
Graphics(int argc, char **argv)Forces
Harmonic(double Dist2, int t1, int t2, double *Pot)Forces
HeaderInteraction(FILE *FileToWrite)VarData
HeaderNano(FILE *FileToWrite)VarData
HeaderSoft(char *Line)VarData
HeightBoundary(double *Pos, int dir)Forces
IfExitForces
IfExtForces
IfFillMatrixForces
IfInterpForces
IfLeavesForces
IfLineForces
IfMetropolis(double ExpArg, double Weight)Forces
IfMoveForces
IfMovieForces
IfNanoForces
IfNormalizeVarData
IfPlotMemVarData
IfRotForces
IfSphereForces
IfSplineForces
IgnoreCh(int c)Forces
IncrDistForces
IncrStep()VarDatainline
Info()Forces
InitConst()Forces
InsertBead(int p)Forces
InsertCh(int c)Forces
InsertChBias(int c)Forces
InsertRest(int pCurr, int StartPos)Forces
InterBSpline(PART *PmIn, PART *PmOut, int NIn, int NOut)VarData
InterBSpline1D(double *PlIn, double *PmOut, int NIn, int NOut)VarData
InterBSpline2D(double **PlIn, double **PmOut, int NIn, int NOut)VarData
InterBSpline2D(double *PlIn, double *PmOut, int NIn, int NOut)VarData
InterCubica(PART *PmIn, PART *PmOut, int NIn, int NOut)VarData
InterDerMatrix(PART *Pm, int NMass, SPLINE Weight, double Offset)VarData
InterForth(PART *PmIn, PART *PmOut, int NIn, int NOut)VarData
Interp()Forces
InterParab(PART *PmIn, PART *PmOut, int NIn, int nOut)VarData
InterParab2(PART *PmIn, PART *PmOut, int NIn, int NOut)VarData
InterPoly(PART *PmIn, PART *PmOut, int NIn, int nOut)VarData
InterSpline3(PART *PmIn, PART *PmOut, int NIn, int NOut)VarData
InterSpline4(PART *PmIn, PART *PmOut, int NIn, int NOut)VarData
IntMaxForces
keyboard(unsigned char key, int x, int y)Forces
KfForces
LangevinTherm()Forces
LateralFluctuation(double *Plot, int LatValue)VarData
ListNeiCell(int p, double *Pos, int *NeiList)Forcesinline
LJ39(double Dist2, int t1, int t2, double *Pot)Forces
LJPot(double Dist2, int t1, int t2, double *Pot)Forces
LnVarData
LoadDensFile(double **Plot, int NBin)VarData
MarchingCubes(double *Plot, int NSample, double IsoLevel, int *NTri)VarData
MarchingSquares(double *Plot, int NSample, double IsoLevel, int *NTri)VarData
MatVarData
Menu()Forces
menuForces
MinHelfrich()Forces
MinimalMD()Forces
MinimalNrg()Forces
MinimizeSol()Forces
MIntVarData
MirrorBlock(Vettore *Px1, Vettore *Px2, Vettore *Px3, int b)VarData
MoveBead(int p)Forces
NAddChainVarData
NAddCholVarData
NanoVarData
NANO_DIST typedefVarData
Nano_DistVarData
NanoDist2(double *Pos, int n)VarDatainline
NanoDist2(double x, double y, double z, int n)VarData
NanoInteraction()Forces
NanoNrg(int p)Forces
NanoNrg(double *Pos, int t)Forces
NanoString(char *cLine, int n)VarData
NChainPSquare(double *Plot)VarData
NChemPotIdForces
NChTypeVarData
NEdgeVarData
nEdgeForces
Neighbour(double *Pos)VarData
NFileForces
NInsertionForces
NormalWeight(VAR_TRIANGLE *Triang, double *Weight, int NGrid, int NTri)VarData
NoTherm()Forcesinline
NPartNearSphereVarData
NPTypeVarData
NRemovalForces
NrgChBondDens(int c, double *Pot)Forces
NrgChDens(int c, double *Pot)Forces
NrgElectro(int p)Forces
NrgPBeadForces
NrgStep(int p)Forces
NrgStepCh(int c, double *Pot)Forces
NShowForces
NSoftVarData
NSolventVarData
NSplineForces
NStuffingVarData
NUpdateForces
NWriteForces
Old2MoveForces
Open(char *InFile, int BF)VarData
OpenRisk(char *InFile, int BF)VarData
OpenTrust(char *InFile, int BF)VarData
OrderPos()VarData
PairCorrelation(double *Point, int NSample, int How, int Type)VarData
PairCorrelationPep(double **Point, int NSample, int Type)VarData
PairCorrelationRound(double **Point, int NSample, int Type)VarData
PairCorrelationSquare(double **Point, int NSample, int Type)VarData
ParticlesForces
pBeta()VarDatainline
PcForces
pChain(int p)VarData
pchiN()VarDatainline
pChPos(int p, int d)VarData
pCm(int d)VarDatainline
pDeltat()VarDatainline
pEdge(int d)VarDatainline
pEnergy(int d)VarDatainline
pInvEdge(int d)VarDatainline
pkappaN()VarDatainline
pkBen()VarDatainline
pkSpr()VarDatainline
PlForces
PlotMemVarData
PmVarData
pNAllocC()VarData
pNAllocP()VarData
pNanoPos(int n, int d)VarData
pNBlock()VarData
pNChain()VarData
pNChain(int b)VarData
pNLink()VarData
pNNano()VarData
pNPart()VarData
pNPCh()VarData
pNPCh(int c)VarData
pNType()VarData
Point2Shape(int iShape)VarData
PointShape(int iShape) (defined in Forces)Forces
PorePos()VarData
PosVectInt(double *Pos)VarData
Potential(double Dist, int t1, int t2, double *Pot)Forcesinline
pPos(int p, int d)VarData
pPos(int p, double *Pos)VarData
pPos(int p)VarData
pPos(double *Pos)VarData
pPosNoBkf(int p, int d)VarData
pReOverCutOff()VarDatainline
PrepareParallel(int argc, char **argv)Forces
PrepareSys()Forces
prho()VarDatainline
PrintForce()Forces
Proc (defined in Forces)Forces
pSprRest()VarDatainline
pStep()VarData
pTemp()VarDatainline
pTime()VarDatainline
pType(int p)VarData
PullBead()Forces
PushBead()Forces
PutPart(int j, int p, int HalfLim, double sigma)VarData
pVel(int p, int d)VarData
pVelMax(int d)VarDatainline
pVol()VarDatainline
pWei2Par()VarDatainline
pWei3Par()VarDatainline
RadDistr(int NSample, double *Plot, double Border[2], int How)VarData
ReadConf(char *InFile)VarData
ReadConfDinamica(char *File)Forces
ReadHeader(FILE *FileToRead)VarData
ReadHeaderTxvl(FILE *FileToRead)VarData
ReadHeaderXvt(FILE *FileToRead)VarData
ReadLineXvt(char *cLine, double *Pos, int *Type)VarData
ReadNano(FILE *ConfFile, int NCircle, int NHeight)VarData
ReadPart(FILE *FileToRead)VarData
ReadPartTxvl(FILE *FileToRead)VarData
ReadPartXvt(FILE *FileToRead)VarData
ReadPartXyz(FILE *FileToRead)VarData
ReadPartXyzt(FILE *FileToRead)VarData
ReadPassThru(FILE *FileToRead)VarData
ReadSoft(FILE *ConfFile)VarData
ReadString(const char *String, char *cLine, double *Value)VarData
ReadString(const char *String, double *Value, char *line)VarData
ReadString(const char *String, char *cLine, int *Value)VarData
ReadVal(char *pLine, double *Value)VarData
ReInsertCh(int c)Forces
RemChFromSys(int c)Forces
RemDens(int pInit, int pEnd)Forces
RemoveChBias(int c)Forces
ReOpen(char *FName, int Bf)Forces
ReSetNChain(int NewNChain)Forces
ReSetNPart(int NewNPart)Forces
ReSetNPCh(int NewNPCh)Forces
RigidCoulomb(int nNano, double Dist, double *Pot, double Sign)Forces
RigidDistanceAxis(int n, int nn, double *dr)Forces
RigidDistanceRad(int n, int nn, double *dr)Forces
RigidHamaker(int n, double Dist, double *Pot, double Sign)Forces
RigidLJ(int nNano, double Dist, double *Pot, double Sign)Forces
RosenIn(FILE *WidomIn)Forces
RosenOut(FILE *WidomIn)Forces
RotateBlock(Vettore *Axis, Vettore *Origin, int b)VarData
RunDynamics()Forces
RunWidom(char *File2Read, int f)Forces
RunWidomBiasChOut(FILE *WidomOut)Forces
RunWidomChIn(char *File2Read, int f)Forces
RunWidomChOut(char *File2Read, int f)Forces
SampleSurface(double *Plot, int NSample, int Type)VarData
SampleSurface(Matrice *Plot, int NSample, int Type)VarData
SampleSurfaceMem(int NSample)VarData
SampleSurfacePart(double *Plot, int NSample, int Type)VarData
SaveCh(int c)Forces
ScaleFVarData
Scattering2d(double **Point, int NSample, int Type)VarData
Scattering2D(double **Point, int NSample, int Type)VarData
SelectBead(int p)Forces
SetBkf(int p)VarData
SetCNorm(int d)VarDatainline
SetCoeff()VarData
SetCoeff(double *v2, double *v3)VarData
SetDeltat(double Val)VarDatainline
SetEdge(double Val, int d)VarDatainline
SetIfNormalize(int If) (defined in VarData)VarDatainline
SetkBen(double Val)VarDatainline
SetkSpr(double Val)VarDatainline
SetNanoBkf(int n)VarData
SetNBlock(int Val)VarData
SetNChain(int NewNCh)VarData
SetNLink(int NewNCh)VarData
SetNNano(int Val)VarData
SetNPart(int NewNPart)VarData
SetNPCh(int NewNCh)VarData
SetNType(int NewNType)VarData
SetPos(int p, double *Pos)VarData
SetPos(int p, int d, double Pos)VarData
SetScaleF(double *Scale)VarDatainline
SetShiftPos(double *RefPos)VarDatainline
SetSprRest(double Val)VarDatainline
SetStep(int Val)VarDatainline
SetTemp(double Val)VarDatainline
SetTime(double Val)VarDatainline
SetType(int p, int t)VarData
SetVel(int p, double *Vel)VarData
ShapeId(int iShape, char *Shape)VarData
ShapeId(char *Shape)VarData
ShiftBlock(Vettore *Shift, int b)VarData
ShiftPosVarData
ShiftRef(int BackFold)VarData
ShiftSys(int How)VarData
Shout(const char *s,...)Forces
Sim1d()Forcesinline
Sim2d()Forcesinline
Sim3d()Forcesinline
SimLeaves()Forcesinline
SimLimitForces
SimRigid()Forcesinline
SmoothGrid(int NSample, char *FWrite)VarData
SmoothGrid(int NSample)VarData
SoftVarData
Solve()Forces
SolveLeaves()Forces
SolveLinks()Forces
SolveLinksIterative()Forces
SolveLinksSparse()Forces
SolveRod()Forces
SpatialDerivative(Matrice *Surface, Matrice *Resp, SPLINE Weight, int NSample)VarData
Spettro2d(double *Points, int NSample, int Type)VarData
Spettro2d(double *Plot, int NSample)VarData
Stalk(int NSample, int NLevel, double **Plot, double Threshold)VarData
StalkLineProf(double *Line, int NBin)VarData
StalkPos(double *OldPos)VarData
StalkPos2(double *OldPos, double *CmStalk)VarData
StalkPos3(double *OldPos, double *CmStalk)VarData
StalkPos4(double *OldPos, double *CmStalk)VarData
StepPot(double Dist2, int t1, int t2, double *Pot)Forces
StringNano(char *NString, int n)VarData
StudySys()Forces
submenu (defined in Forces)Forces
SubNanoHeader(char *cFile)VarData
SumDens(int pInit, int pEnd)Forces
SumForcesMD()Forces
SumSomeForces(int HowMany)Forces
SumTens(int p1, int p2, double Forces, double *DistRel)Forces
SumTens(int p1, int p2, double *Pre)Forces
SumTens(double *Pos1, double *Pos2, double *Pre)Forces
SwapChain(int c1, int c2, int b)VarData
SwapChain(int c1, int c2)VarData
SwapPart(int p1, int p2)VarData
SysAllocForces
SysCreateVarData
SysDef(char *cSystem)VarData
SysFormatVarData
SysInfo(char *cSystem)VarData
SysProperties()VarData
SysShapeForces
SysState()VarData
SysTypeVarData
TabForceAlloc(int NTabExt)Forces
TabPot()Forces
Task()Forces
TensForces
TENS_REF typedefForces
Tens_RefForces
TensRef(double *Pos1, double *Pos2, double *PosP1, double *PosP2)Forcesinline
TensRefCart(double *Pos1, double *Pos2, double *PosP1, double *PosP2)Forces
TensRefPol(double *Pos1, double *Pos2, double *PosP1, double *PosP2)Forces
ThermModeForces
TimeForces
Transform(int block)VarData
Trial()Forces
TrialSys()VarData
TryInsert()Forces
TryInsertCh()Forces
TryInsertChBias()Forces
TryMove()Forces
TryMoveCh()Forces
TryRemove()Forces
TryRemoveCh()Forces
TryRemoveChBias()Forces
TwoPartDist(int p1, int p2, double *RelDist)VarData
TwoPartDist(double *Pos, int p2, double *RelDist)VarData
TwoPartDist(int p1, int p2, double *RelDist, double CutOff)VarData
TwoPartDist(double *Pos, int p2, double *RelDist, double CutOff)VarData
TwoPartDist2(int p1, int p2, double *RelDist)VarData
TwoPartDist2(double *Pos, int p2, double *RelDist)VarData
Update()Forces
VarData()VarData
VarMessage(const char *s,...)VarData
VelVerlet1()Forces
VelVerlet2()Forces
VelVerletRigid()Forces
VelVerletRigid2()Forces
ViscosityForces
VolumeCircSlab(double *VolContr, int NSample)VarData
Voronoi()VarData
Wave()Forces
Wei2(const double r, const double b)Forces
Wei3(const double r, const double a)Forces
WeightSetBond(int p, int t)Forces
WidomBiasChIn(double *Weight)Forces
WidomBiasChOut(double *Weight, int c)Forces
WidomInsert(double *NrgDiff)Forces
WidomInsertCh(double *NrgDiff)Forces
WidomRemove(double *NrgDiff, int p)Forces
WidomRemoveCh(double *NrgDiff, int c)Forces
Worm(int Partition, int NSample, double *Border, double *dPoint)VarData
Write(char *OutFile)VarData
WriteLinkedSurf(FILE *FWrite, double *Plot, int NSample, int NType, double *Bound, int *PId)VarData
WriteSurf(FILE *F2Write, double **Plot, int NSample, int OffSet)VarData
WriteTens(char *TFile, int Comp, double InvNFile)Forces
WriteTens2d(FILE *FWrite, int Comp, double InvNFile)Forces
WriteTxvl(char *OutFile)VarData
WriteXvt(char *OutFile)VarData
WriteXyz(char *OutFile)VarData
~Forces()Forces
~VarData()VarData